From Tuberculosis › Chapter 2: Clinical presentation · Médecins Sans Frontières, Current online edition, 2026
MSF clinical guidance on recognising and managing TB in lymph nodes, meninges, bones, joints, kidneys, genital organs and abdomen.
- Issuer
- Médecins Sans Frontières
- Edition
- Current online edition, 2026
- Audience
- Clinicians in MSF programmes and resource-limited settings
- Evidence
- Expert consensus based on MSF field experience and published evidence
- Reviewed
- 21 Oct 2026 · GMJ
What this guideline says
GMJ summary
This MSF clinical guideline section addresses extrapulmonary tuberculosis (EPTB), which accounts for approximately 16% of global TB cases. EPTB occurs when M. tuberculosis spreads from a pulmonary focus to other organs, most commonly lymph nodes, meninges, bones and joints, kidneys, genital organs and the abdominal cavity. Young children, HIV-infected persons and malnourished patients are at higher risk due to relative immunodeficiency.
The guideline emphasises that patients with EPTB may also have concurrent pulmonary TB, which should always be sought. It provides detailed clinical presentations for eight forms of EPTB: lymph node TB (the most common, particularly in Africa and Asia), tuberculous meningitis (a medical emergency most common in children under 2 years), bone and joint TB (including spinal TB/Pott’s disease), urogenital TB, abdominal TB, pleural effusion, pericardial effusion and cutaneous TB.
Diagnosis relies on clinical presentation combined with specimen collection and testing where possible. The guideline notes specific diagnostic clues for each form, such as cold painless lymph nodes that soften and fistulise, subacute meningitis with cranial nerve palsies, chronic mono-arthritis with joint destruction, and pyuria unresponsive to antibiotics in urogenital TB. Lymph nodes typically disappear within 3 months of treatment, though paradoxical reactions may occur without requiring treatment changes.
Key points
For clinicians — doses and thresholds as stated in the guideline
- Approximately 16% of global TB cases are extrapulmonary; young children, HIV-infected persons and malnourished patients are at higher risk
- Always search for concurrent pulmonary TB when EPTB is diagnosed or suspected; up to 40% of bone and joint TB patients have concurrent PTB
- Lymph node TB presents as cold, painless adenopathy (usually bilateral or single) that evolves chronically towards softening and fistulisation; nodes typically disappear within 3 months of treatment
- TB meningitis is a medical emergency most common in children under 2 years and HIV-infected persons; any delay results in irreversible neurological sequelae or death
- Spinal TB (Pott's disease) most frequently affects the thoracic spine; localised back pain may precede radiological anomalies by several months, and missed diagnosis can result in paralysis
- Tuberculous pleural effusion is often asymptomatic if less than 300 ml; shortness of breath and chest pain occur with large effusions
- Urogenital TB diagnosis is suspected when pyuria and haematuria do not respond to antibiotics for urinary infection
- Paradoxical reactions in lymph node TB (appearance of abscesses, fistulas or other lymph nodes) may occur at treatment initiation but do not require treatment changes
From the guideline
Verbatim
“TB meningitis is a serious form of TB that affects the meninges. It is most common in children under 2 years and in HIV-infected persons. It is a medical emergency. Any delay in diagnosis or treatment will result in irreversible neurological sequelae or death.”
Editor’s perspective
Why this matters for Georgia and the region
Prof. Giorgi Pkhakadze, MD, MPH, PhD
Editor-in-Chief, Georgian Medical Journal · Chair, Public Health Institute of Georgia · WHO consultant, health and migration
As Editor-in-Chief of the Georgian Medical Journal and Chair of the Public Health Institute of Georgia, I recognise that extrapulmonary TB remains underdiagnosed in our region despite Georgia's high MDR-TB burden. This MSF guidance is particularly valuable because it provides practical clinical descriptions that can help primary care physicians and district hospital clinicians recognise EPTB presentations before specialist referral. I would stress to Georgian colleagues the critical importance of maintaining high suspicion for TB meningitis in children under 2 years presenting with subacute meningitis, as any diagnostic delay results in irreversible neurological damage or death. The main implementation challenge will be ensuring adequate specimen collection and diagnostic capacity beyond Tbilisi, particularly for cerebrospinal fluid and pleural fluid analysis, which may require strengthening laboratory networks in regional centres.
ORCID 0000-0001-7609-4515 · Perspective written for the GMJ Guidelines Library, 21 Oct 2026
Applicability
Georgia and the South Caucasus
Georgia has a moderate TB burden with multidrug-resistant TB prevalence among the highest in the WHO European Region. This MSF guidance on extrapulmonary TB is directly relevant for Georgian clinicians, as EPTB diagnosis requires high clinical suspicion and may be missed in settings focused primarily on pulmonary disease. The National Tuberculosis Programme should ensure that clinicians in primary and secondary care are trained to recognise EPTB presentations, particularly lymph node TB and TB meningitis, which require early diagnosis. Access to specimen collection and diagnostic testing capacity for cerebrospinal fluid, pleural fluid, ascitic fluid and lymph node biopsies will be critical for implementing this guidance in both urban and rural Georgian healthcare facilities.
Questions this guideline answers
Quick answers
How common is extrapulmonary TB compared to pulmonary TB?
Approximately 16% of global TB cases are classified as extrapulmonary TB, though this varies by local epidemiology. Patients with EPTB may also have concurrent pulmonary TB, which should always be sought.
Which patients are at highest risk of developing extrapulmonary TB?
Young children, HIV-infected persons and malnourished patients are at higher risk of developing EPTB due to relative immunodeficiency. TB meningitis is most common in children under 2 years and HIV-infected persons.
What are paradoxical reactions in lymph node TB and do they require treatment changes?
Paradoxical reactions may occur at the beginning of treatment, presenting as appearance of abscesses, fistulas or other lymph nodes. However, a change in treatment is not required; lymph nodes usually disappear within 3 months of treatment initiation.
How can urogenital TB be distinguished from a common urinary tract infection?
Urogenital TB should be suspected when there is pyuria (white blood cells in urine) and micro- or macroscopic haematuria that does not respond to antibiotics for urinary infection. Patients may have dysuria, pollakiuria, nocturia, back/abdominal pain or epididymitis.
Related on GMJ
Interconnected resources
Dictionary of Public Health
GMJ News coverage
Quality & accreditation
Same guideline
- Pulmonary tuberculosis — MSF TuberculosisChapter 2: Clinical presentation
Other guidelines on this topic
- Issuer
- Médecins Sans Frontières
- Guideline
- Tuberculosis
- Chapter
- Chapter 2: Clinical presentation
- Type
- Clinical guideline (chapter)
- Edition
- Current online edition, 2026
- Status
- Current
- Published
- 2026-10-14
- Languages
- English
- Scope
- Extrapulmonary tuberculosis
- Audience
- Clinicians in MSF programmes and resource-limited settings
- Evidence
- Expert consensus based on MSF field experience and published evidence
- Record history
- Created 21 Oct 2026 · updated 21 Oct 2026 · next check Apr 2027
Médecins Sans Frontières. 2.2 Extrapulmonary tuberculosis. In: Tuberculosis. Chapter 2: Clinical presentation. Paris: MSF; 2026.GMJ Guidelines Library records are original summaries written by the GMJ editorial team from the issuer’s published document and reviewed by a physician. They do not replace the full guideline. The document is the copyright of its issuer and is linked, not hosted. Spotted an error or a newer edition? Tell the Guidelines Desk.
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